mrqart.seq_report

Functions

parse_seq_path(path)

Parse a slash-delimited path into (project, subid, seqname).

render_seq_report(*, project, subid, ...[, ...])

Classes

SeqMismatch(col, expect, n_mismatch, ...)

class mrqart.seq_report.SeqMismatch(col: 'str', expect: 'str', n_mismatch: 'int', n_total: 'int', values_seen: 'List[str]', n_null: 'int', series_examples: 'List[str]')[source]
Parameters:

  • col (str)

  • expect (str)

  • n_mismatch (int)

  • n_total (int)

  • values_seen (List[str])

  • n_null (int)

  • series_examples (List[str])

mrqart.seq_report.parse_seq_path(path)[source]

Parse a slash-delimited path into (project, subid, seqname). Expected format: “Project/SubID/SequenceName” Raises ValueError with a helpful message if the format is wrong.

Parameters:

path (str)

Return type:

Tuple[str, str, str]